rs241305596 SNP Detail

Summary

• ID
  rs241305596
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:123179802 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTCAGGAGGA AGTTTCCGGC
  GCGCCTGAAA CAGGCTATGC CTGAACAGGA AGTCCCGCCT CCAGGACGCC GAAGATATGA
  TGTCACACGA CGAGACCCAA TGGGGATGTA GTGGTGGTTG AGGGCGAGGA GCCGCTTTTG
  GCTATCTTCT TAGTGCTTAA AGTCTTTCCT GAAGGGTTAG GCTCGGTTTT TTTGTTTTTT
  K
  TTTTTCCTGC TCATAAAAGA AGTTTTTCTT TTTCCCGTTA ACCAATTGTC CGCCTGCCAG
  TCCTGGCTTT TTAATATTTG AGGGATGCTT GTGGGTTTCT TTCACTGCAA TACTGACCGG
  CTTGTGAAGG ACTGGATCGC CGCTCAGTAA CCTTGGCAAG TTAGCGAGCT TTTGTAAAAG
  AACAGAGAAA GAGGGTCTTG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359526189	MGP_WTSI_3_123089071	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	T	G	G	T	G	G	T	T	G	G	G	G	G	G	G	T	T	G	T	T	G	G	G	G	G	G	G	T	G	G	T	G	G	G	T	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241305596					SNP	G	G	G	T	G	G	T	G	G	T	T	G	G	G	G	G	G	G	T	T	G	T	T	G	G	G	G	G	G	G	T	G	G	T	G	G	G	T	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359526189	MGP_WTSI_3_123089071	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:123179802 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13777	CpG island 13777	85 bp distal
Mettl14	methyltransferase 14, N6-adenosine-methyltransferase subunit	163 bp upstream
Rr397990	regulatory region 397990	100 bp downstream
Rr584510	regulatory region 584510	233 bp distal
Rr584511	regulatory region 584511	within coordinates
Tssr35499	transcription start site region 35499	481 bp upstream
Tssr35500	transcription start site region 35500	160 bp upstream
Tssr35501	transcription start site region 35501	143 bp upstream