rs241186538 SNP Detail

Summary

• ID
  rs241186538
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:84572259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGGCTCTT GAGTTAAGGA
  TAAGCTCTCA TTGACACTGG GCTTAGAAGC CACCGGTTCC TGTCTATCCC AAGGGTTTAG
  TAGTGGAGTC TTCACACTCA TTTCCATGAC CCCAGGCCAT CCCCCTTAAT TTCATTGAGG
  ACAATAGAGA CTGATAAAAT TCCAAAGCCA GGTGCACTTG AAACCCAAGG CTCAGAGCCA
  Y
  GCAGGCCTCT AGAGTCACAC AGCAGCTAAG CATACTGGTC AGAAGCCAGT TACAGCTCTA
  ACCTAAGGGA CAGAGACTGC AAGGCTCCTC CCTGTGGAGA TCCATTCAGA CCATGGAGTA
  GCCTCAGGGA GACCACCCCC CACCCCCATT GCAACAAGCA GGAAAAATGG AGGCCTGAAT
  TTCATTTGGG AGCTCTTCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354686761	MGP_WTSI_2_84582072	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241186538					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354686761	MGP_WTSI_2_84582072	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:84572259 () rs orientation: forward

Symbol	Name	Function Class
Cpgi11865	CpG island 11865	837 bp proximal
Gm19426	predicted gene, 19426	249 bp downstream
Gm57423	predicted gene, 57423	1974 bp upstream
Mir130a	microRNA 130a	737 bp upstream
Rr373462	regulatory region 373462	within coordinates
Rr560320	regulatory region 560320	627 bp distal
Rr560321	regulatory region 560321	1032 bp distal
Rr560322	regulatory region 560322	within coordinates
Rr560323	regulatory region 560323	733 bp proximal
Rr560324	regulatory region 560324	1283 bp proximal
Rr560325	regulatory region 560325	1834 bp proximal
Rr560326	regulatory region 560326	1985 bp proximal
Tssr18679	transcription start site region 18679	1006 bp upstream
Tssr18680	transcription start site region 18680	1083 bp upstream
Tssr18681	transcription start site region 18681	1965 bp upstream
Tssr25039	transcription start site region 25039	1777 bp downstream
Tssr25040	transcription start site region 25040	1834 bp downstream
Tssr25041	transcription start site region 25041	1852 bp downstream