rs241154490 SNP Detail

Summary

• ID
  rs241154490
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:89299753 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACAGCGACCC CCACTCTGCT
  CAGGGCAGGT GCGCCGGCGC CGGCGGCAAG ACCGCTGGTA GGTCGAGTTC TTATCACCCA
  CCCTCGCACT GGAGTTGTGA GAGCAAAAGC TGACTTTGAA AAGGTGGCGG TGGGCCTGAG
  GCTTGAGAGA CCGGAATGTG ATTGCGGAGC GGGAGGGGCA GAGGGGTCGT CCTGCTGAGC
  M
  GCACTACCGC TGGAGAGACG ACGCGGCTCT GGAAGCGCAA GAAACCGAAT AGTCCAGCCG
  GTAACTTTCC CCCAAGCCGC GGTTCCTCCC GCTGCCCCCC ACCCCCCGTG CCACTGGCCT
  GGGTCCAGCC CACCGTGCCA GGGGGGCGCG GAGCTGGGTG GGTGGGTGGG GACACGCGTT
  GTCCTAGTTA TAGTCCGTCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358811609	MGP_WTSI_3_89196368	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs241154490					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358811609	MGP_WTSI_3_89196368	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:89299753 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13427	CpG island 13427	within coordinates
Cpgi13428	CpG island 13428	446 bp proximal
Cpgi13429	CpG island 13429	1226 bp proximal
Gm15417	predicted gene 15417	within coordinates
Rr375331	regulatory region 375331	within coordinates
Rr397788	regulatory region 397788	1119 bp upstream
Rr580069	regulatory region 580069	606 bp distal
Rr580070	regulatory region 580070	388 bp distal
Rr580071	regulatory region 580071	276 bp distal
Rr580072	regulatory region 580072	within coordinates
Rr580073	regulatory region 580073	906 bp proximal
Tssr30097	transcription start site region 30097	576 bp downstream
Tssr30098	transcription start site region 30098	238 bp downstream
Tssr30099	transcription start site region 30099	195 bp downstream
Tssr30100	transcription start site region 30100	1413 bp upstream
Tssr30101	transcription start site region 30101	1822 bp upstream
Tssr34133	transcription start site region 34133	689 bp downstream
Tssr34134	transcription start site region 34134	848 bp downstream
Tssr34135	transcription start site region 34135	1183 bp downstream
Zbtb7b	zinc finger and BTB domain containing 7B	Intron