rs241124529 SNP Detail

Summary

• ID
  rs241124529
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117739823 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACTGC TTTAGTACCA GCAGTCGGCA
  Y
  CCACACTCAA GGGACACACA GAGAC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321280669	CHEV_4_117555231	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs241124529					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117739823 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atp6v0b	ATPase, H+ transporting, lysosomal V0 subunit B			1700 bp downstream
B4galt2	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi14670	CpG island 14670			71 bp proximal
Gm12841	predicted gene 12841			924 bp upstream
Rr598245	regulatory region 598245			within coordinates
Rr598246	regulatory region 598246			377 bp proximal
Rr598247	regulatory region 598247			476 bp proximal
Rr598248	regulatory region 598248			592 bp proximal
Rr598249	regulatory region 598249			959 bp proximal
Tssr38640	transcription start site region 38640			916 bp upstream
Tssr38641	transcription start site region 38641			971 bp upstream
Tssr43002	transcription start site region 43002			802 bp downstream
Tssr43003	transcription start site region 43003			1871 bp downstream