rs240833913 SNP Detail

Summary

• ID
  rs240833913
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:28079324 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCTGCTGGT TTAGGACTGT
  GATTCCGGCC CCTCAGGGAG GCTGAGGCAG GAGACTGGTA GTTCAAGGCC TGGCTCCACT
  ATACAGTGGG TTCTAGGGCA GCTTGAGTAA CTTGGTGAGA CCCTTTTCTT AGGAAGTAAA
  AAGATGCCAG ATCACTGATG GCCCAAACTT TTAATTTCAG CACTTGGAAG GCAGAAGCAG
  W
  CGGATTTCTA TGAGTTCGAG GCTAGCCTGG TCTACAGAGT GAGTTCCAGA ACAGCCAGGA
  CTACACACAG AAACCCTGTC TTTTTTGTTT GTTTGTTGTT TTTGTTTTTC GAGACAGGGT
  TTCTCTGTAT AGCTCTGGCT GTCCTGGAAC TCACTTTGTA GACCAGGCTG GCCTTGAACT
  CAGAAATCCG CCTGCCTCTG                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss370858546	MGP_WTSI_7_29164918	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240833913					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss370858546	MGP_WTSI_7_29164918	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:28079324 () rs orientation: forward

Symbol	Name	Function Class
Gm44710	predicted gene 44710	within coordinates
Gm57214	predicted gene, 57214	513 bp downstream
Gm73795	predicted gene, 73795	1350 bp upstream
Rr368284	regulatory region 368284	635 bp upstream
Rr400210	regulatory region 400210	388 bp downstream
Rr644240	regulatory region 644240	1945 bp distal
Rr644241	regulatory region 644241	909 bp distal
Rr644242	regulatory region 644242	655 bp distal
Rr644243	regulatory region 644243	154 bp distal
Rr644244	regulatory region 644244	231 bp proximal
Rr644245	regulatory region 644245	344 bp proximal
Rr644246	regulatory region 644246	860 bp proximal
Rr644247	regulatory region 644247	1361 bp proximal
Tssr2163	transcription start site region 2163	499 bp upstream
Tssr2164	transcription start site region 2164	397 bp upstream
Tssr2165	transcription start site region 2165	354 bp upstream
Tssr65464	transcription start site region 65464	1846 bp downstream
Tssr65465	transcription start site region 65465	509 bp downstream
Tssr65466	transcription start site region 65466	1360 bp upstream
Tssr65467	transcription start site region 65467	1384 bp upstream
Tssr65468	transcription start site region 65468	1493 bp upstream
Tssr71498	transcription start site region 71498	1959 bp upstream
Tssr71499	transcription start site region 71499	1865 bp upstream
Tssr71500	transcription start site region 71500	1841 bp upstream
Tssr71501	transcription start site region 71501	1814 bp upstream
Tssr71502	transcription start site region 71502	1789 bp upstream
Tssr71503	transcription start site region 71503	1748 bp upstream
Tssr71504	transcription start site region 71504	1717 bp upstream
Tssr71505	transcription start site region 71505	1700 bp upstream
Tssr71506	transcription start site region 71506	1686 bp upstream
Tssr71507	transcription start site region 71507	1639 bp upstream
Tssr71508	transcription start site region 71508	1605 bp upstream
Tssr71509	transcription start site region 71509	1545 bp upstream
Tssr71510	transcription start site region 71510	1501 bp upstream
Tssr71511	transcription start site region 71511	1465 bp upstream
Tssr71512	transcription start site region 71512	1385 bp upstream
Tssr71513	transcription start site region 71513	798 bp upstream
Tssr71514	transcription start site region 71514	664 bp upstream
Tssr71515	transcription start site region 71515	636 bp upstream
Tssr71516	transcription start site region 71516	382 bp downstream
Tssr71517	transcription start site region 71517	1028 bp downstream
Tssr71518	transcription start site region 71518	1050 bp downstream
Tssr71519	transcription start site region 71519	1071 bp downstream
Tssr71520	transcription start site region 71520	1115 bp downstream
Tssr71521	transcription start site region 71521	1127 bp downstream
Tssr71522	transcription start site region 71522	1169 bp downstream
Tssr71523	transcription start site region 71523	1393 bp downstream
Tssr71524	transcription start site region 71524	1979 bp downstream
Zfp36	zinc finger protein 36	mRNA-UTR