rs240801528 SNP Detail

Summary

• ID
  rs240801528
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:95854428 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AACTTTTCAA ATTGGAAAGA
  ATTGAAATTT TAGTAGGTCA CTTATCTGTG GGTCTCAGTG ATAAACGTGC TTTAAAGAGT
  GTGTGGTTAT AGTAATTCAC ATTGCAAAGT TTACAATTCC CAACTTACAT TATTTTCATA
  ATATGTGCTT ATATTTTAGC CAGAGATATC TTTAGAAATG TAGAGGCTGT GGTCTCTACC
  C
  GTAACATTGA GAGCAACGCG GGTGGTGGTG GGGGGGGGGG AGGGCGGGGG TTGGGAGAGA
  GTCACAATAC CGACTCTTCA ATTCTTTAGG CCTATAGTTT TCATGAAGTT TCATTAGTAT
  TTATTGTGTC TAGAATACAC TTTAGCAAAA TTGTGAGGTT GCGTCGAAAA TGCCCTCACT
  GTATTTTTAA AATGAAACTG                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362492431	MGP_WTSI_4_95632882	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NON/ShiLtJ	NZB/BlNJ	NZW/LacJ	PL/J	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SJL/J	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240801528					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362492431	MGP_WTSI_4_95632882	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:95854428 () rs orientation: forward

Symbol	Name	Function Class
9530080O11Rik	RIKEN cDNA 9530080O11 gene	within coordinates
Hook1	hook microtubule tethering protein 1	1049 bp upstream
Rr398349	regulatory region 398349	771 bp upstream
Rr595498	regulatory region 595498	383 bp distal
Rr595499	regulatory region 595499	247 bp proximal
Rr595500	regulatory region 595500	768 bp proximal
Rr595501	regulatory region 595501	1454 bp proximal
Tssr37834	transcription start site region 37834	926 bp upstream
Tssr37835	transcription start site region 37835	1014 bp upstream
Tssr37836	transcription start site region 37836	1131 bp upstream
Tssr37837	transcription start site region 37837	1193 bp upstream
Tssr37838	transcription start site region 37838	1214 bp upstream
Tssr42465	transcription start site region 42465	814 bp downstream