rs240696598 SNP Detail

Summary

• ID
  rs240696598
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:180535085 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCGCCCCAGT GATAATCGCC
  CGGTGCCGGA GCCGAGCGCG GATACGAGCG GAGGCAGCGG CGGCGGCGGC GAGCGCGGGG
  ACGGTCGCAC CCGGTCTAGG CAAGGAGAGT GGGAGTCAGA CTCCCGCAGT GCCGACCTCG
  CGGACGCCGG GCTCCCACCC GGCCCTCAGG AATTTGCCCG GCTTCCTTGG CACTGTCCCT
  S
  CGCTCTCCTC CACCCGGGGC CGTAGCGTGC GGGTCCTGCG GGCGCCAAGA AGGAGGCGGA
  GGCGGGATCG GGCGACAGCG CAGGCTGTGC TGCGGAGCGG AGGCGGCAAC CGAGAAGCAG
  CAGGCGGCGG CGGCTCGCGC CCGGACGGGT AACTGCGCTG GCGGCCCGTG CCGGGGCGAG
  CCGGTCTCTC AGGTCACCCC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss356769450	MGP_WTSI_2_180627997	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240696598					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	C	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss356769450	MGP_WTSI_2_180627997	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:180535085 () rs orientation: forward

Symbol	Name	Function Class
2810461L16Rik	RIKEN cDNA 2810461L16 gene	within coordinates
Cpgi12907	CpG island 12907	1485 bp distal
Cpgi12908	CpG island 12908	within coordinates
Gm27032	predicted gene, 27032	Coding-NonSynonymous
Gm57443	predicted gene, 57443	335 bp upstream
Mir124a-3	microRNA 124a-3	748 bp upstream
Rr572875	regulatory region 572875	1963 bp distal
Rr572876	regulatory region 572876	1462 bp distal
Rr572877	regulatory region 572877	525 bp distal
Rr572878	regulatory region 572878	346 bp distal
Rr572879	regulatory region 572879	205 bp distal
Rr572880	regulatory region 572880	225 bp distal
Rr572881	regulatory region 572881	within coordinates
Rr572882	regulatory region 572882	121 bp proximal
Rr572883	regulatory region 572883	1731 bp proximal
Tssr22278	transcription start site region 22278	154 bp downstream
Tssr28138	transcription start site region 28138	353 bp upstream
Tssr28139	transcription start site region 28139	109 bp downstream
Tssr28140	transcription start site region 28140	116 bp downstream