rs240405232 SNP Detail

Summary

• ID
  rs240405232
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:120806231 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGTTTATT AGCCTGTTAT
  TAACACACTT TTACCCCATA CATTTTTCTT CAAATTTACT TTAGTTATTG TATGATATTC
  TGTTGTGTGT GTCATTTTAA AGATTTTTAA AATTTTGTTT TATTTGAGAC AGAATCTCAT
  TATGTAGCCT TGACTGGCCT CTAACTCAGA GATCATCCTG TCTCTGTCTC CATGTGCTGA
  W
  TTAAAGGCTT GAGCCACTAA GCTTGGCTTA TTTTAAAGGT TTGTATTGTG AATTGTTTCT
  AGTATCTTTA TTTTCCTTTT ACAGTTAAAT TTTTTTAACA TTTTATTTTT AAGGGCTGAA
  GAAGTGCCTC AGTGGTTAAG AGTACTTGTG GCTCTTACAG AGGATTGAGA TTCCGCTCTC
  AGCACTTACA TAGTCCTTCA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355458372	MGP_WTSI_2_120801486	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs240405232					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355458372	MGP_WTSI_2_120801486	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:120806231 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12148	CpG island 12148	1192 bp proximal
Gm55820	predicted gene, 55820	1901 bp downstream
Rr563749	regulatory region 563749	231 bp proximal
Rr563750	regulatory region 563750	454 bp proximal
Rr563751	regulatory region 563751	765 bp proximal
Rr563752	regulatory region 563752	777 bp proximal
Rr563753	regulatory region 563753	1287 bp proximal
Rr563754	regulatory region 563754	1293 bp proximal
Rr563755	regulatory region 563755	1359 bp proximal
Rr563756	regulatory region 563756	1741 bp proximal
Tmem62	transmembrane protein 62	1267 bp upstream
Tssr19722	transcription start site region 19722	1331 bp upstream
Tssr19723	transcription start site region 19723	1398 bp upstream
Tssr19724	transcription start site region 19724	1498 bp upstream