rs239877160 SNP Detail

Summary

• ID
  rs239877160
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:79474576 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATGGAGAAA TTTTGTGGGG
  CACCTGAGGA AAGAGGGCAG AGGATGGCGC AGGGCTCCCA CCTGGGGAGA CCTGGAGAGC
  AAGGAAGGAG GACGGCGCTG AGGTTCCACC CAGAAGGAGC AGTAGAAAAG GGACAGGGCG
  GTTCGCGGCT CTGAGACCCT GAAAGAAGTG GAAAGAGGAG CCCAACCTGG GAGAACCCGG
  Y
  GAGGGAGGGA AGAGGATGCT GCTGGGTCCC ACCCAGAAAG AGGGGCGAGA GAGGCGTGGG
  GTCCCACCCG GGAGGACCGG GACAGAGGAG AGTGAGAGAC TGGGGTCTTT CCCAGGAGGA
  TCTGGGAAGA AGGGACAGGG TGGCGCGGGG TCCCGCCCAG GAGGAGGGGA CAGGGTGGCG
  CGGGGGTCCG GTCTCCATGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358584831	MGP_WTSI_3_79371191	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239877160					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	T	C	C	C	C	T	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358584831	MGP_WTSI_3_79371191	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:79474576 () rs orientation: forward

Symbol	Name	Function Class
4930589L23Rik	RIKEN cDNA 4930589L23 gene	923 bp upstream
Cpgi13275	CpG island 13275	within coordinates
Fnip2	folliculin interacting protein 2	Intron
Rr578548	regulatory region 578548	within coordinates
Rr578549	regulatory region 578549	403 bp proximal
Rr578550	regulatory region 578550	909 bp proximal
Rr578551	regulatory region 578551	1939 bp proximal
Tssr29585	transcription start site region 29585	1033 bp upstream
Tssr33723	transcription start site region 33723	89 bp downstream
Tssr33724	transcription start site region 33724	416 bp downstream
Tssr33725	transcription start site region 33725	478 bp downstream
Tssr33726	transcription start site region 33726	502 bp downstream
Tssr33727	transcription start site region 33727	536 bp downstream
Tssr33728	transcription start site region 33728	833 bp downstream