rs239843869 SNP Detail

Summary

• ID
  rs239843869
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:110484150 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCTT AGTATGAGCT TACCTTTCCT
  R
  AGCACAGATA CCCTCTATGC CAGGG                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss323193700	CHEV_9_110557586	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239843869					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:110484150 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Ccdc12	coiled-coil domain containing 12			Intron
				mRNA-UTR
Gm42470	predicted gene 42470			597 bp upstream
Gm69744	predicted gene, 69744			within coordinates
Nbeal2	neurobeachin-like 2			921 bp upstream
Rr401701	regulatory region 401701			703 bp downstream
Rr401702	regulatory region 401702			1244 bp upstream
Rr687152	regulatory region 687152			951 bp distal
Rr687154	regulatory region 687154			1567 bp distal
Rr687155	regulatory region 687155			1065 bp distal
Rr687156	regulatory region 687156			431 bp distal
Rr687157	regulatory region 687157			507 bp proximal
Rr687158	regulatory region 687158			931 bp proximal
Rr687159	regulatory region 687159			1656 bp proximal
Tssr87398	transcription start site region 87398			1384 bp upstream
Tssr87399	transcription start site region 87399			1412 bp upstream
Tssr91642	transcription start site region 91642			1077 bp upstream
Tssr91643	transcription start site region 91643			1001 bp upstream
Tssr91644	transcription start site region 91644			870 bp upstream
Tssr91645	transcription start site region 91645			828 bp upstream
Tssr91646	transcription start site region 91646			1300 bp downstream