rs239267807 SNP Detail

Summary

• ID
  rs239267807
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:115593997 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTCAGAGT ATGTTCCTCA
  ATGGTTTTTC AAACTCCTTC TACAAAACCC TGCAAGGTTT ACTTCCTGAT GTTTCTGTAA
  CTTCATTTCC TATCACTTTT TTTTTTCCAA ACCAGGTCTT TCTGAGCACT CCTTCATGAT
  ACCATTTTAC TTACTCTCTG GCTTCCTAAG GATCTATGCC CAAAAATCCC TTCATCAAAG
  R
  CAACAGGCAT GCCTCACCCT ATCTTATTTG GGTTTCCTTC ATAATATGCA TCCACTTCTA
  AAGTGTAATA TGTGTGCCTA TTGTTGCTTT CATGCTCAAA TACAAGCTGG AGCAGATGAG
  CAGATAAAAT AGAGGAAGCC CAATTGAATT TAAATTTCAG ATAAACAATG AATTATTTTT
  CAATATGAAG TTGTCATAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362936695	MGP_WTSI_4_115409405	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239267807					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362936695	MGP_WTSI_4_115409405	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:115593997 () rs orientation: forward

Symbol	Name	Function Class
Cpgi14611	CpG island 14611	665 bp proximal
Cpgi14612	CpG island 14612	1878 bp proximal
Efcab14	EF-hand calcium binding domain 14	944 bp upstream
Rr597763	regulatory region 597763	454 bp proximal
Rr597764	regulatory region 597764	695 bp proximal
Rr597765	regulatory region 597765	881 bp proximal
Rr597766	regulatory region 597766	1160 bp proximal
Tssr38464	transcription start site region 38464	938 bp upstream
Tssr38465	transcription start site region 38465	954 bp upstream
Tssr38466	transcription start site region 38466	1023 bp upstream
Tssr38467	transcription start site region 38467	1613 bp upstream