rs239237185 SNP Detail

Summary

• ID
  rs239237185
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:138610339 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGAGTGATT GTAATAAAAG
  CTGTCATTAA TAAACTCGGT TCTACCTTAC ATGGGATCAC GTCGTCTTAC TTTTTCTGAA
  TCATTTCTCA GATGTAAGTT ACTGTAAAAC ACTCTGGAAT GTCTCCTTAA AACACAAAGG
  GCCGGGGCCA GGGGGACAGC TCATGTACAG TGTGCTTGAA ACTTAGGGTT CAATCCCATG
  K
  CCCTGAAACC ACCATCATTT CCAGAACTCC TACGGAGGTG GGTCAGGATG CAGCTTGAGG
  ACTTGCACTG GTGAACTCCT AAGATGCTGA TGAGACTACA CATTGATTTT TAGAAACACC
  AATCAGTCCC GGAAGGGAGG GGAAATTTGT GGATGTAAGG GGCTAAGCCT CTGAGTTGCT
  AAACGTGGGC AGACACAGCA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359923045	MGP_WTSI_3_138567542	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs239237185					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359923045	MGP_WTSI_3_138567542	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:138610339 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13880	CpG island 13880	366 bp distal
Rr586228	regulatory region 586228	1023 bp proximal
Rr586229	regulatory region 586229	1649 bp proximal
Rr586230	regulatory region 586230	1679 bp proximal
Rr586231	regulatory region 586231	1950 bp proximal
Tspan5	tetraspanin 5	mRNA-UTR
Tssr32017	transcription start site region 32017	1566 bp downstream
Tssr32018	transcription start site region 32018	1464 bp downstream
Tssr32019	transcription start site region 32019	1414 bp downstream
Tssr32020	transcription start site region 32020	1391 bp downstream
Tssr32021	transcription start site region 32021	1313 bp downstream