rs239197142 SNP Detail

Summary

• ID
  rs239197142
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:51295018 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGCTA GCCTCGAACC CATAAATCCA
  Y
  CTGCCTCTGC CTCCCAAGTG CTGGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320762594	CHEV_3_51191519	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs239197142					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51295018 () rs orientation: forward

Symbol	Name	Function Class
Gm5103	predicted gene 5103	1273 bp downstream
Mgarp	mitochondria localized glutamic acid rich protein	815 bp downstream
Rr576306	regulatory region 576306	535 bp distal
Rr576307	regulatory region 576307	359 bp proximal