rs238887844 SNP Detail

Summary

• ID
  rs238887844
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:189496669 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCTCAGGGA CAGCCAGAAG
  ACAATCGCCT CGAGGCCTGG CTGTGAGCTC TGGGTCTAGA GGGTCTGCTG TGGCAGTGGT
  TCTCAGGACC TTGTGTTTGG ACTTCCAGGG GCGGGTCTAG TACTTGCATG CAAATATGAC
  AGAAACGTTT GTTCCCTATC AGCACAGAAG GGGGTGGTGG CCACCTTCCT GATACTCATA
  Y
  CTTCCTGAAT GTCATACAAA GGGAAGCAGG CAGTGACTTT GTATTTGTTT CTTTGTATTA
  TGGGATGTAG TCCAGACAAC TTGAATTTTC CTCCTTTCCT ATCCGGTGGT GGAAGAATTG
  GGAAGTGGAG CTGTCACTGG CTGGGTCCTA ACAGCTGTTT CACTGTCTAC AGGGAAGGGA
  CATTTGAGGA AGGTTCCAGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320191540	CHEV_1_191588351	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238887844					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:189496669 () rs orientation: forward

Symbol	Name	Function Class
Ptpn14	protein tyrosine phosphatase, non-receptor type 14	Intron
Rr425842	regulatory region 425842	within coordinates