rs238779311 SNP Detail

Summary

• ID
  rs238779311
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:109264961 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AACCTAGGT TGTCAAGGTG GGTGCTGTCA
  CTATCAACAT GGCTGTCTTG GCCAGCCCCA CCCCCACCCC TCCAAAGTCA CAGTCAGACC
  CCCTAGGTTG ATCCCGGGCA CTGCCAGTTG CTGTCTGGAG ATAGTCAGCA GCTCTGCTGT
  R
  TTTGGGTTTC AGTGCTTAGG GGGCAGTTGC TGGGATCCTA GGCTGCTGGG AGGTTGCTGG
  GCAGAGAGAG ATCCTGCTCA GGTGAGCTGG GAGGGGTGCC TGCCCTACCT GGAGACTCAG
  ACTAGTGACA ATATTTGCCA AGGGCCTGAG                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321254097	CHEV_4_109080369	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238779311					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:109264961 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14573	CpG island 14573			within coordinates
Rr597311	regulatory region 597311			1542 bp distal
Rr597313	regulatory region 597313			644 bp distal
Rr597314	regulatory region 597314			within coordinates
Tssr38345	transcription start site region 38345			1001 bp downstream
Tssr38346	transcription start site region 38346			645 bp downstream
Tssr38347	transcription start site region 38347			599 bp downstream
Tssr42761	transcription start site region 42761			1502 bp upstream
Ttc39a	tetratricopeptide repeat domain 39A			Intron
				Noncoding-Transcript-Variant
Ttc39aos1	Ttc39a opposite strand RNA 1			1531 bp upstream