rs238686109 SNP Detail

Summary

• ID
  rs238686109
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr18:15333544 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCTACCTGGC TGGCCTTTCC
  GTAATGGCTT CTGGGGATTG AACTCAGGTC CCCACACTTG CACAGGTAGC ACTTCACTGA
  TGGAGCCATC TCCCCAGCCA GGATGACATT TAACAAACAT TTTAATTTTT ATTGTGTGTG
  GGGGAGGTGC AGGTGCTGAC AGAGGCCAAA GGTATTAAAT CCCCTAGAAC TGAGCTTACA
  R
  GTAGTTGAGG TAGATGCCAG GAGTTGAACT TGAGTCCAAC ACTCAAGAAC TCTTAACCTT
  AACTGCTGAA CTAGCTGTCT AGATGTTCCT GCCACTCACA ACCTCCTTGT TCAGGACTTT
  TTGACACAAG AAGACAACCA ATTTTTGGGT GACCGGAAAT ACAGTGAGCT GCCTGTCCAC
  TATTGCCATT CCTTCTTAGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325533074	CHEV_18_15358996	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238686109					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:15333544 () rs orientation: forward

Symbol	Name	Function Class
Gm50035	predicted gene, 50035	625 bp downstream
Gm57822	predicted gene, 57822	within coordinates
Rr534370	regulatory region 534370	990 bp proximal