rs238592545 SNP Detail

Summary

• ID
  rs238592545
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:51467986 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCAGCCCCCG CCTGAGCCGA
  GCGACCCGCC ATCCGCTTAG GGACCGCGGC GGCCTTCGGC TCGGCCCGGC GCGCGTCGCA
  GACCGCCACT CTTTTGGCGC TTTCCGCCCC AGGCGCCTGT CCCCACCCCA GAGTCCTGGA
  GAAAAGCTTG TACCTTCCAC GGCTTCCTCC ACCACCTCAT CGTCGCTATC CATGGCGGCT
  R
  AGACCCTACC CAGCCCGGGG CCGTGCGGCC GGCTCCCGTC CCTCTGGGTG CTCCTGGTGG
  CTGAGCGAGC GCTGGAGCTA AGCCCTGCGA GTTTGGAGGA GGGGGAGGAG GGGGAGGAAG
  AGGAGGAGCA GTCGGGGCGG CTCGCGCTGC CTCCCCCTAC AGTCCTTTCA ATTCCTCCGC
  CAGCCGCGGC AGCCGCAGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss357933019	MGP_WTSI_3_51364487	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238592545					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357933019	MGP_WTSI_3_51364487	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:51467986 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
5031434O11Rik	RIKEN cDNA 5031434O11 gene			within coordinates
Cpgi13142	CpG island 13142			within coordinates
Gm38200	predicted gene, 38200			913 bp upstream
Rr397660	regulatory region 397660			744 bp downstream
Rr576339	regulatory region 576339			520 bp distal
Rr576340	regulatory region 576340			within coordinates
Rr576341	regulatory region 576341			147 bp proximal
Rr576342	regulatory region 576342			304 bp proximal
Rr576343	regulatory region 576343			710 bp proximal
Rr576344	regulatory region 576344			826 bp proximal
Setd7	SET domain containing (lysine methyltransferase) 7			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Tssr29063	transcription start site region 29063			784 bp downstream
Tssr29064	transcription start site region 29064			589 bp downstream
Tssr33224	transcription start site region 33224			968 bp upstream
Tssr33225	transcription start site region 33225			932 bp upstream
Tssr33226	transcription start site region 33226			30 bp downstream
Tssr33227	transcription start site region 33227			236 bp downstream
Tssr33228	transcription start site region 33228			251 bp downstream
Tssr33229	transcription start site region 33229			1217 bp downstream