rs238565044 SNP Detail

Summary

• ID
  rs238565044
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:90518299 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACTTGCCTCT GCTTTCTGAG
  TGCCCCCACA CCTGGCCTGG CACATACACA GTCAATCCCA GAAACTGTTT TGCTATCCTG
  GAGCTAATAA AGGTAGAGGG GAGGACCTCT GGTTCATCTG GTGCTAATTA GGGGGACAGA
  GCCCCAGGGG AGGAGCCCAG TCTGGGGACC AGGATCGTGT TCCAGAGAAG CAGTTTCCAG
  Y
  ATCATGACTA GCAACATCCT GCATCCAAGG GAGACCTAGA ACTGATTGCA ATGGAGGGAA
  AGCAGGGTCT ACAAATTTGC ATCTCCTTGT TTTACCCTAA GGCTCTGTCT TCAACTTCCT
  AGTAGAGCCA GGGTGCAGGG ACCAAACTGG GAGGAGGACA TCTGGTGCCA GGCCAGGTTT
  TAGGGTAGGG GGCATGCTGG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss358835840	MGP_WTSI_3_90414914	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238565044					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss358835840	MGP_WTSI_3_90414914	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:90518299 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13468	CpG island 13468	1994 bp proximal
D3Nds7	DNA segment, Chr 3, Nuffield Department of Surgery 3	1228 bp distal
Rr580415	regulatory region 580415	1381 bp distal
Rr580416	regulatory region 580416	1128 bp proximal
Rr580417	regulatory region 580417	1685 bp proximal
Rr580418	regulatory region 580418	1796 bp proximal
S100a5	S100 calcium binding protein A5	Intron
S100a6	S100 calcium binding protein A6 (calcyclin)	1890 bp upstream
Tssr30241	transcription start site region 30241	1597 bp downstream
Tssr30242	transcription start site region 30242	1280 bp upstream
Tssr30243	transcription start site region 30243	1840 bp upstream
Tssr30244	transcription start site region 30244	1877 bp upstream
Tssr30245	transcription start site region 30245	1908 bp upstream