rs238334206 SNP Detail

Summary

• ID
  rs238334206
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:172391874 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TGGCGACTA TTTTGGGGGA CGCCGGACGC
  CATGTTGTGG AAAATAACAG ATAATGTCAA GTATGAAGAG GATTGCGAGG TGAGCGGGGG
  CTAGGGAACG TAGCCCCGCC GGCCCGAGCG GGGTCCCAGG GCTGCTGGCC AAGGCTGGGG
  R
  CGTTTGCGCG GAGCCCTCGC CTTCGGGAGG GATGAGGGCC AGTCTTCGGC CATCTCCTGG
  GCCCCTTGTT GAATCTGGTC TTGTCTCTCG GGGACAAGGC CTGGCAAGAG CGTGGCAAAC
  CCACCCGCAG AACTCAACTG TGGGTTCCTA                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320619388	CHEV_2_172375454	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238334206					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:172391874 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12824	CpG island 12824	952 bp distal
Cpgi12825	CpG island 12825	within coordinates
Rr571697	regulatory region 571697	351 bp distal
Rr571698	regulatory region 571698	338 bp proximal
Rr571699	regulatory region 571699	654 bp proximal
Tfap2c	transcription factor AP-2, gamma	Intron
Tssr21966	transcription start site region 21966	349 bp downstream
Tssr21967	transcription start site region 21967	305 bp downstream
Tssr21968	transcription start site region 21968	807 bp upstream
Tssr21969	transcription start site region 21969	1074 bp upstream
Tssr21970	transcription start site region 21970	1549 bp upstream
Tssr21971	transcription start site region 21971	1568 bp upstream
Tssr27948	transcription start site region 27948	981 bp downstream