rs238297494 SNP Detail

Summary

• ID
  rs238297494
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:156268426 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGGCTTGAA GGAGGGGCAG
  GTGCCACTTT GGAGCCAGGT CTCCGCTCTG CTGCCAGCGG TACTCCAGGA GTCTGACAAG
  TTTACAGGGC TTGTTTCTGC TTCACTCCGT AAGCGACTTT TCTCAACTGC TGGCTCTGTG
  CTCCATTTAT TTTCCCTCTC ACTTGAACAG TAAGATCCAA ATATTCCATT CAGCTTTTTT
  Y
  CCCCTCCTGT AGCTGCTTTC CTTCTGTGTT TCCCTCTTCC TCTGTCCCCT ATCCCATTTC
  TCCAACTCCC TCTTCAGTCA CCCCTATTGC CTCCAGTCTC TGGTTTACTC CTATGCTATA
  GTGTTCCCAG TGTTTCCCTC ACACCTTAGT TCCTGTCATT CCTTATTCTC CCTGTTTTTC
  CAGATTTCCC TTTCCACTAA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss360368050	MGP_WTSI_3_156225753	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238297494					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360368050	MGP_WTSI_3_156225753	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:156268426 () rs orientation: forward

Symbol	Name	Function Class
4930570G19Rik	RIKEN cDNA 4930570G19 gene	1043 bp upstream
Cpgi13974	CpG island 13974	155 bp distal
Negr1	neuronal growth regulator 1	Intron
Rr587959	regulatory region 587959	1147 bp distal
Rr587960	regulatory region 587960	810 bp distal
Rr587961	regulatory region 587961	within coordinates
Rr587962	regulatory region 587962	663 bp distal
Tssr32476	transcription start site region 32476	920 bp downstream
Tssr32477	transcription start site region 32477	796 bp downstream
Tssr32478	transcription start site region 32478	656 bp downstream
Tssr32479	transcription start site region 32479	593 bp downstream
Tssr32480	transcription start site region 32480	99 bp downstream
Tssr32481	transcription start site region 32481	within coordinates
Tssr36286	transcription start site region 36286	1014 bp upstream