rs238296880 SNP Detail

Summary

• ID
  rs238296880
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:17077981 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTGAGGTAT TGAATGGGCT
  AGTGTCAGTT CCAGGCTTGG GCTTCAACAG ACCTTGCTTG TCTCTCTCTG CTTCCTTGGA
  GCTCTGATCC TATTTTGGGA AGTAGCCAGG CCAGCCTGGA GGGAAAGAGA GGCCACAGAA
  ACAGATGAGC GATCTCAGCA GGAGCTCCCC TGAACCATTC ACCCTGAAGT GAACAGAAGC
  R
  TGGCTGGCTG CTGGTCCAGC TAGCTGACCC CAGGTCATAC CATTGTTGAG GCATGAAGAG
  AACAGAAAGG ACAAAATAAA CAACTGTCTT TATCAGTGCA CTTGTAGGTT TTTAAGCACC
  AAATCATGGC TGGGATAGTC TTATCTCCCT CCTGTAGTCA GAGGTATGGA AGGAGTCATG
  GTGGTGACTT TCTTCAACTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321753466	CHEV_6_17027982	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238296880					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:17077981 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm4876	predicted gene 4876			within coordinates
Rr626760	regulatory region 626760			4 bp distal
Rr626761	regulatory region 626761			1210 bp proximal
Tes	testin LIM domain protein			Intron
				Noncoding-Transcript-Variant