rs238279061 SNP Detail

Summary

• ID
  rs238279061
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:148214374 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGCAACAAA CCAGTTGAGA
  ACATCTTGTC TGCTACCAGA CTGGGGTGAT GGACTAAAGG GACAAGCAGC AGTAGCAAGG
  GTCACTGCCT GAAAGAGTGA AGGCCAAGAG AGTACCCAGC TGAGATGCCC AGACAAAACT
  TGTTAGGGAA ACCCAGGAAC ACTCACTCCT TAAACACAAG CTCTGGCTCC GGAAGGCAGC
  Y
  GAGCCCTTGT GTCTGAAAAG CCTCATGGTG GGAAAAGCCC AAGCCATCCC AGAGAATGGA
  ACTAGGTGCC CTCGAGGCGT AAAGCAAACA CTAGTCCAGC CCCAATGGGG AAAAAAAATG
  TGAGGCCAGG CTATGCCAGT TTTGGGTGAG TTTAGCGTCC CGAACACACC CAGCCTCCGG
  GGGGCGTCGT TGAAAGGGAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321417520	CHEV_4_147504026	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238279061					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148214374 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15291	CpG island 15291	155 bp proximal
Draxin	dorsal inhibitory axon guidance protein	Intron
Mad2l2	MAD2 mitotic arrest deficient-like 2	467 bp upstream
Rr604596	regulatory region 604596	within coordinates
Rr604597	regulatory region 604597	170 bp proximal
Rr604598	regulatory region 604598	771 bp proximal
Rr604599	regulatory region 604599	1009 bp proximal
Tssr1378	transcription start site region 1378	916 bp upstream
Tssr40251	transcription start site region 40251	825 bp upstream
Tssr40252	transcription start site region 40252	858 bp upstream
Tssr40253	transcription start site region 40253	966 bp upstream
Tssr44585	transcription start site region 44585	721 bp downstream
Tssr44586	transcription start site region 44586	734 bp downstream
Tssr44587	transcription start site region 44587	761 bp downstream