rs238249564 SNP Detail

Summary

• ID
  rs238249564
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:105721719 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TAAGACGGCT GGGGATGTAG
  GTCAGTGGTA GAACTACATG CCTGGCACAC ACAAGGCCCT GGAATTTAAG CACCAGAATC
  AAAGAGCTTC CTGTCTGAGA CATACATGAG GTTTGCTTTG CACTTCCATG GAGCAGTCTG
  TGAGGTAAAT TGGCTTGGGG GATTTTTAAC TCATCCAAAC GATTGGCAAA ACACGAAACT
  R
  GGAAAAGCCA CGATCCTCAG GAGGCTGTGT CCTCTCAGAA TGGGTCAGGC TTGGACCTCA
  CTTCCTTGGC TTCTAGCAAT TAGGACCATT TGGACAAACC CTAAACCCTG CTACCTTCTT
  CAGCTATGTG GTAGGCCTGC TACCATGCCT GTCTTCCATG TGAGTCAGAG GGGAGTTATG
  GGGCTAACAG GAACTTTGGA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320863275	CHEV_3_105617321	CHEVERUD	SCREENING_POP	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238249564					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:105721719 () rs orientation: forward

Symbol	Name	Function Class
Gm5547	predicted gene 5547	1164 bp upstream
Rr582787	regulatory region 582787	672 bp proximal
Rr582788	regulatory region 582788	1187 bp proximal
Rr582789	regulatory region 582789	1730 bp proximal
Tssr31084	transcription start site region 31084	1127 bp upstream