rs238226598 SNP Detail

Summary

• ID
  rs238226598
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:52660912 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATATTTTTA AAAATTAATT
  AATTAATTTT TAGTACTGTA GCTGTCTTCA GACACACCAG AACAGGTTAC TGGATCCCAT
  AACAAATGGT TGAGAGTCAC CCTGTGGTTG CTGGGGATTG AACTCAGGAC CTCTGGAAGA
  GCAGTCAGTA CTCTTAACTG CTGAGCCAGC TCTTCAGCCC CAGTGGAATC TTTTTGTAGC
  W
  TTAAAAATAA AAGTATTTGG GGCAGGCCAG ATGGCTCAGC AGGGGAAGGA ACTTGATACC
  AAGCCTGAGA ACCTGAGTTC CATCCTCGAG ACCCACATAG GAGAGAGAAA TGACTGCTGA
  AAGTTTTCCT CTGATCTCCA CACCTATACC TCAGAATGCA CATGAGTGTG GGCACACAAA
  CACACACACA CACACACACA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320765050	CHEV_3_52557413	CHEVERUD	SCREENING_POP	f	SNP	T	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238226598					SNP	T	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:52660912 () rs orientation: forward

Symbol	Name	Function Class
Gm2447	predicted gene 2447	within coordinates
Rr576580	regulatory region 576580	957 bp proximal
Tssr33262	transcription start site region 33262	1554 bp downstream