rs238205013 SNP Detail

Summary

• ID
  rs238205013
• Variation Type
  SNP
• Alleles
  T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:107544634 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTGATTTT CTCCTTTGAG
  TCTTTGATTG CAACTCTCTG GTGTCCGTGT TCCTGTCGTA GTGTTCCCTC CCCCTCTCGG
  TTCCCCGTGC GCCGCACCCC CTCCCCCCAC CTGGGGCTAA GAAGTTGTTA CCATTCTGGG
  CTCATTAGAC TCTTGAAAGT TGCGAGGGGC GGGGGTGGGG GGGGTGGGGG GGGGTGGGGG
  T
  GGGGGAAGGT TCATAAAACT TTGCTTGTTT AAAAAAGTTT TCCTCATTTC TGAAAGTGGG
  CAAGAGCGTA TTCACTGGGT TGTCATTTCA GGAATTTTAC AGGAAACTGG CACCATTCAA
  AGAGTCTAAG TTTTAGATAG GAAGTGACTT TAATCCCAAC ATACGGACCT CTGAATTCAA
  GGCAGGCCTG GTCTACAGAG                                            
  
  T = T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CE/J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	MA/MyJ	NOD/ShiLtJ	NZO/HlLtJ	QSi3/Ianm	RIIIS/J	SJL/J	SWR/J
ss362765663	MGP_WTSI_4_107360042	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	A/J	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	CE/J	DBA/2J	FVB/NJ	I/LnJ	KK/HlJ	MA/MyJ	NOD/ShiLtJ	NZO/HlLtJ	QSi3/Ianm	RIIIS/J	SJL/J	SWR/J
rs238205013					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362765663	MGP_WTSI_4_107360042	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:107544634 () rs orientation: forward

Symbol	Name	Function Class
Gm12899	predicted gene 12899	691 bp upstream
Rr376978	regulatory region 376978	within coordinates
Rr597042	regulatory region 597042	564 bp proximal
Tssr38260	transcription start site region 38260	1052 bp upstream