rs238140253 SNP Detail

Summary

• ID
  rs238140253
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:120806846 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATAACCACA TGGTGGCTCA
  CAACCATCTG TAATGGGATC GGATGCCCTC TTCTGGTGAG TCTGAAGAGG GTGACTGTGT
  ACTCACATAC ATAAAATCAA CATGTAAATC TTTTTAAAAA TTGTAATTAA TTTTTTGGGG
  GGATAGGGTC TCTCTACATA GTCCCAGCTG TCCTGAAACT CATTATGTAG ACCAAGCTGG
  Y
  CTCGAACTCA CAGAAATCTT CCTGCGTTTG TTTCCCAAAT GCTGGCATTA AAAGTGTGTG
  CCATCACACC CACCTAAAAA TATTTTATTT TTGTACTAAT TATATGTGTG TCTGAAAGTG
  GGTTTATGCA ACCCAGTGCA TTCTCTATAG AGAACAGAAG GGGGCGTTGT ATTCCCTGGC
  GCTTGTGGTC AGAAGCCTTC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss355458389	MGP_WTSI_2_120802101	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs238140253					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355458389	MGP_WTSI_2_120802101	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:120806846 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12148	CpG island 12148	577 bp proximal
Gm55820	predicted gene, 55820	1286 bp downstream
Rr563749	regulatory region 563749	363 bp distal
Rr563750	regulatory region 563750	140 bp distal
Rr563751	regulatory region 563751	150 bp proximal
Rr563752	regulatory region 563752	162 bp proximal
Rr563753	regulatory region 563753	672 bp proximal
Rr563754	regulatory region 563754	678 bp proximal
Rr563755	regulatory region 563755	744 bp proximal
Rr563756	regulatory region 563756	1126 bp proximal
Tmem62	transmembrane protein 62	652 bp upstream
Tssr19722	transcription start site region 19722	716 bp upstream
Tssr19723	transcription start site region 19723	783 bp upstream
Tssr19724	transcription start site region 19724	883 bp upstream