rs238001840 SNP Detail

Summary

• ID
  rs238001840
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:65175650 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAAGAAGGAG GAGGCTGCTC
  ACCTCATGAT GGAAGGCAGT AGAGCCATGC CATACCCTTT CTTTCCCTTT TGCTCTGTCT
  GGGGCCCAGC CCACATTATG CCTCCATTGG CAGCACACCC CTCCCCGGCC TTGGTTGATA
  CACTAAAAAT GTATTCACAT GGAATTTCAG CTCTGCTTGT GTAACCTCCC AGGTGTCCCC
  Y
  AGTGACCAAG GTTAACCATC ACAATGTGGT AAGACACCTG GCTCTGTTGC AAAGCAGACC
  ACAGCGTCTA TTACAATAAA ATTCACTGAT TTCTCAGCAG CTTTCATCCC CGTGTCTTTT
  AGAAGTTGCA CACACAGTGC TATGTATAGA TAGATCTACT TTGCCGTTTT AGTAGCACAA
  TCCTGACGAT AAGAACGGCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss325655601	CHEV_18_65202233	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs238001840					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:65175650 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm41756	predicted gene, 41756			within coordinates
Gm56499	predicted gene, 56499			1873 bp upstream
Nedd4l	neural precursor cell expressed, developmentally down-regulated gene 4-like			Intron
				Noncoding-Transcript-Variant
Rr539431	regulatory region 539431			1884 bp distal
Rr539432	regulatory region 539432			1693 bp distal
Rr539433	regulatory region 539433			283 bp proximal
Rr539434	regulatory region 539434			924 bp proximal
Tssr153684	transcription start site region 153684			1869 bp upstream
Tssr153685	transcription start site region 153685			1838 bp upstream