rs237852331 SNP Detail

Summary

• ID
  rs237852331
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:66271009 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TATTCAAGCA TGCTGACAGA ATTGGAACCT CTTAGAATTG
  CCTACCTGCA CCTATCAGCC TGGCTGACAG GAGCCCGCCA AAGGATTAAA AAAAAACAAA
  M
  CCCAAAACAT AAAATCATGC AAAAAAATAT TTACCCCCGA AAGATGTATG TAGTTAAAGC
  TCAGCTTCCT GCAGCCTCGA TAGCCCCTGA AGTGTTAAT                       
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320323963	CHEV_2_66278722	CHEVERUD	SCREENING_POP	f	SNP	A	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs237852331					SNP	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:66271009 () rs orientation: forward

Symbol	Name	Function Class
Gm13629	predicted gene 13629	215 bp upstream
Rr558183	regulatory region 558183	within coordinates
Scn1a	sodium channel, voltage-gated, type I, alpha	Intron
Tssr18000	transcription start site region 18000	191 bp upstream
Tssr18001	transcription start site region 18001	248 bp upstream
Tssr24381	transcription start site region 24381	88 bp downstream
Tssr24382	transcription start site region 24382	230 bp downstream
Tssr24383	transcription start site region 24383	484 bp downstream