rs237406890 SNP Detail

Summary

• ID
  rs237406890
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:108290389 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTTGGCTAT ATGGTGAATT
  CAAAGGCCAG CATGAGCTAC ACTAGTCTCT GTCTCAGAAA ATAGCAAAAA ACAAAGGGAA
  AAGAAACAGA TGGTGTGTGT GTGTGTGTGT GTGTGTGTAT CAGTGAATGG AGAGGAGTGG
  TCTGGTCATA GCCAGTCAAC AACATTCACA ACAGCAAAGG CTTCTTTCCA ACCTGAAGCA
  R
  GCCTAGGGTA GAAGGTGGTA GTGACTGTGC TCTAAGGATG CGCCAGACCA TGCTATTTGC
  TGAACTTTTA CAGGCCCACC ATTAAAGTGC ACACATCTCC AGCATCCTGG CGAAGAAATA
  AATTCTTCAC ACGAACAAGA TCTTTAGCAA TAGGTAATCC TTTTGCACTT AGGGAGCACA
  GCTCTGACAT CTTTTATTAT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359163785	MGP_WTSI_3_108185991	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	G	A	A	G	G	A	A	A	G	G	A	G	A	A	A	G	A	A	A	G	A	A	A	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs237406890					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	G	A	A	A	A	G	A	G	A	A	G	G	A	A	A	G	G	A	G	A	A	A	G	A	A	A	G	A	A	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359163785	MGP_WTSI_3_108185991	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:108290389 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13699	CpG island 13699	393 bp proximal
Gm12522	predicted gene 12522	within coordinates
Psrc1	proline/serine-rich coiled-coil 1	766 bp upstream
Rr375556	regulatory region 375556	within coordinates
Rr583221	regulatory region 583221	554 bp distal
Rr583222	regulatory region 583222	14 bp distal
Rr583223	regulatory region 583223	214 bp proximal
Rr583224	regulatory region 583224	664 bp proximal
Rr583225	regulatory region 583225	1465 bp proximal
Tssr31246	transcription start site region 31246	756 bp upstream
Tssr31247	transcription start site region 31247	814 bp upstream
Tssr31248	transcription start site region 31248	910 bp upstream
Tssr31249	transcription start site region 31249	932 bp upstream
Tssr35142	transcription start site region 35142	532 bp upstream