rs237390136 SNP Detail

Summary

• ID
  rs237390136
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:132390154 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GAGGTGCGCG CTCACCCTCG
  GGTTCTGAGC CGGGGACCCG GGAGGCCCGC GCGGACGGAG GCGTGTCGCT CCGGCTGTCA
  CCTTCCCTAG GCGGCCTCTT GTAGACGCGC CTGAAATGCA GGACACGGCC CACTAAGCAC
  TGCCAGGCAT AGCTTCCGCG CTTAGGAGCT CAACCCCCCA ATCTCTGCGT CCCCAGATTC
  W
  GGCAGGTATT CTGGTGTCGC CGCTTGCCTG GCGTTAGTGG GTGGGACTTG TGGGACAATC
  AGGTACTGTG AGTGACCCGG CCATTCTGCA GGAACCCATA GAACCAATCT GTGGAGCTGC
  TTGCTGTTGT GTTTGTCTCC AAACTTCCTT CTCCCTGAAG CCCAAGTTCA CCGAGTCTTA
  GAAATGCAAA TACGATTTTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359770682	MGP_WTSI_3_132347357	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs237390136					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359770682	MGP_WTSI_3_132347357	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:132390154 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Aimp1	aminoacyl tRNA synthetase complex-interacting multifunctional protein 1			23 bp upstream
Cpgi13843	CpG island 13843			within coordinates
Rr367561	regulatory region 367561			159 bp downstream
Rr585442	regulatory region 585442			520 bp distal
Rr585443	regulatory region 585443			695 bp distal
Rr585444	regulatory region 585444			239 bp distal
Rr585445	regulatory region 585445			within coordinates
Tbck	TBC1 domain containing kinase			mRNA-UTR
				Noncoding-Transcript-Variant
				Splice-Site
Tssr31756	transcription start site region 31756			248 bp downstream
Tssr31757	transcription start site region 31757			202 bp downstream
Tssr35732	transcription start site region 35732			537 bp upstream