rs237202993 SNP Detail

Summary

• ID
  rs237202993
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:12749907 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TCCTCAGTA ACAATGTGAC CGTGGTTAAT
  ATGTGTCAAA GTCAACACAT TGTCTTGTAA CTGCCTTTGA AAGCGACTTC GTACTTAAAA
  GTGTGCACGA CGCTGTCTAA TTGCATGAAT AAGAATGTAC AAACACTGCC AGTATATTCT
  C
  TTTTAATGAT GAAGTGCATA AAAGTTCCAT TCCTTTCTCT TCCATCACTA TTGAAAACGC
  ACTACTAAGG ACCAGAGGTG GGGATAAAAA TTAAGCCGCA AATGAGTCAG TAGCAGCAGT
  TGGCTTCCAC CCAGTTAATA ACTATTTCTA                                 
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321745448	CHEV_6_12699908	CHEVERUD	SCREENING_POP	f	SNP	C	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs237202993					SNP	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:12749907 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17163	CpG island 17163	357 bp distal
Rr626539	regulatory region 626539	666 bp distal
Rr626540	regulatory region 626540	8 bp distal
Rr626541	regulatory region 626541	427 bp proximal
Thsd7a	thrombospondin, type I, domain containing 7A	655 bp upstream
Tssr1780	transcription start site region 1780	718 bp upstream
Tssr59828	transcription start site region 59828	829 bp upstream
Tssr59829	transcription start site region 59829	813 bp upstream
Tssr59830	transcription start site region 59830	741 bp upstream
Tssr59831	transcription start site region 59831	699 bp upstream
Tssr59832	transcription start site region 59832	468 bp upstream