rs236524764 SNP Detail

Summary

• ID
  rs236524764
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:122039059 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGAAGCAGGC ACGCTCTCAA GGCCTGGGAG GATGGACCTC
  CGGCGGTCCT CTCGAAGAGG GCGTGTCCAG GGCCGCAGCG CGGGCGGCCA TTGGCTGAGC
  R
  GCGCTCCCGG GCGCACCGTC AACTCTCACG AGGCGCTGGC GGCGTAGGCC GCGCGCCGCG
  CTCTGGCCGG CAGGGGGCGC ACGTCCGCGC GCTGTTCTC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss320909884	CHEV_3_121948328	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236524764					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:122039059 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13765	CpG island 13765	within coordinates
Gclm	glutamate-cysteine ligase, modifier subunit	147 bp upstream
Gm46822	predicted gene, 46822	within coordinates
Gm65290	predicted gene, 65290	1600 bp downstream
Rr375675	regulatory region 375675	933 bp downstream
Rr397979	regulatory region 397979	within coordinates
Rr584262	regulatory region 584262	1558 bp distal
Rr584264	regulatory region 584264	1141 bp distal
Rr584265	regulatory region 584265	71 bp distal
Rr584266	regulatory region 584266	within coordinates
Rr584267	regulatory region 584267	63 bp proximal
Rr584268	regulatory region 584268	812 bp proximal
Tssr1039	transcription start site region 1039	333 bp upstream
Tssr31478	transcription start site region 31478	66 bp upstream
Tssr31479	transcription start site region 31479	153 bp upstream
Tssr31480	transcription start site region 31480	171 bp upstream
Tssr31481	transcription start site region 31481	200 bp upstream
Tssr31482	transcription start site region 31482	215 bp upstream
Tssr31483	transcription start site region 31483	366 bp upstream
Tssr31484	transcription start site region 31484	500 bp upstream
Tssr35443	transcription start site region 35443	181 bp upstream
Tssr35444	transcription start site region 35444	78 bp upstream