rs236498425 SNP Detail

Summary

• ID
  rs236498425
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:131986551 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGGGGTAG AAGCAGAAGT
  GTTAGGGATT CAAGGTCATC TTCAGTTACA TAAGAAGGCT GAGACTATAC AAAACCTTTG
  TTTAAAATAA AAACAAAAAC AAAAAAAGGA GATGGGTGCC TGCCTGCAAG ATGGCTCAGA
  AGGTAAAGAC AGGCTATTGT TATGGAGCAT AAAAACCTGA GTTTGATCTG AAGGACACAG
  R
  CAGTGGAAGG AGAGACTCAA ATCCTGTGTT GTCCTCTGAC CTCCACAAGT ATACCAGCAA
  GGCAGGCAGG CAGGCAGACA CACCAATATA CACACACAGA CAGTGACAGG AACATATACA
  TTTTTGCTGT TGTTTTGAGA CACAGGCTGG AACATGCAAT GTAGTTGGCC TCAGACTAGG
  ATATCTGCCT GCTGCTGCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321331981	CHEV_4_131815155	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs236498425					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:131986551 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Cpgi14953	CpG island 14953			1496 bp proximal
Gm28874	predicted gene 28874			1296 bp upstream
Gmeb1	glucocorticoid modulatory element binding protein 1			Intron
				mRNA-UTR
Rr600911	regulatory region 600911			1146 bp proximal
Rr600912	regulatory region 600912			1299 bp proximal
Tssr39362	transcription start site region 39362			1264 bp upstream
Tssr39363	transcription start site region 39363			1281 bp upstream