rs236446928 SNP Detail

Summary

• ID
  rs236446928
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117740165 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATTCCCAACC CCTCCCTCCA
  GGGCAGGGGC TCTGGGTCAG GCTAGCCACC AAACTGAGGG GTGCGTCTGG GCGGGGCTGG
  GAGGCTGAAC ACGTGGCACC TCGGGACGGG GGAGGCAGTA GGACAGGTGG GTGTGGAGCC
  CTGGGGAGGG GTGCATGCAG TGGGGGATGT GGAAGTGGGG CCGGGGCCGA GCGCCTCTGC
  R
  AGACACAAGG CCGGGGCGAG CGAGGACAAT GAGGGAGGCC GGATGGGGGC GGACGCCGGA
  GCCCAGGAGG CTAGCGGGAT GGGGGTAGGG TGGGGTGCAG CCAGGCCGGG GGCAGCGCCG
  GTGCCTCGCT CACCGGGTCC TGGGCTGGGA TCTGTGACGG CGCGCGGGCG GCCCCCTAGC
  CGGGCCGGGT CTGGAATGTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362979328	MGP_WTSI_4_117555573	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236446928					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362979328	MGP_WTSI_4_117555573	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117740165 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atp6v0b	ATPase, H+ transporting, lysosomal V0 subunit B			1358 bp downstream
B4galt2	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant
Cpgi14670	CpG island 14670			within coordinates
Gm12841	predicted gene 12841			582 bp upstream
Rr598245	regulatory region 598245			within coordinates
Rr598246	regulatory region 598246			35 bp proximal
Rr598247	regulatory region 598247			134 bp proximal
Rr598248	regulatory region 598248			250 bp proximal
Rr598249	regulatory region 598249			617 bp proximal
Tssr38640	transcription start site region 38640			574 bp upstream
Tssr38641	transcription start site region 38641			629 bp upstream
Tssr43002	transcription start site region 43002			460 bp downstream
Tssr43003	transcription start site region 43003			1529 bp downstream