rs236388779 SNP Detail

Summary

• ID
  rs236388779
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:117741952 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGTCCCAGG AAAACCAGCA
  ATAAATAACA GTAGGGCACG GCCCCACCCA TACAGGTCAT CTAGTCACCC ATCTTCACTC
  TGGAGGTCTG CAAAGGAAAA ACAGGACAAA TCAGGCAGGG ACAGTGACCA GTGACAAGAC
  CAGAACCAGC AGGCCAGTGG GTGGACAGAC GGACAGACAC ACTATGACAG ACAAACAGAC
  R
  TGGACAGTAA CAAAGGAGCT CAGCTGTACA ACAGAGAAGA CAAGTCCCAT GGACAGTGTT
  AGTGTCGCCA AGAGTCAGCC CAGTCAAGCA CCCAAGTCAC AAACTCACAC ACTGGAAAAT
  ATGAATTTAG ACATGCTAGT CTACTGACAA GTGTGTCATA CATACAGAAC ACAGACCCTG
  AGAGACAGAA ACTCCACAAA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss362979348	MGP_WTSI_4_117557360	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	G	G	A	A	A	A	A	A	A	A	G	G	A	A	G	A	A	A	A	A	A	A	A	A	G	A	A	A	G	A	G	G	A	A	A	G	A	A	A	A	G	A	A	A	A	G	G	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236388779					SNP	A	A	A	A	G	G	A	A	A	A	A	A	A	A	G	G	A	A	G	A	A	A	A	A	A	A	A	A	G	A	A	A	G	A	G	G	A	A	A	G	A	A	A	A	G	A	A	A	A	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss362979348	MGP_WTSI_4_117557360	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:117741952 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Atp6v0b	ATPase, H+ transporting, lysosomal V0 subunit B			Intron
				Noncoding-Transcript-Variant
B4galt2	UDP-Gal:betaGlcNAc beta 1,4- galactosyltransferase, polypeptide 2			1228 bp upstream
Cpgi14670	CpG island 14670			911 bp distal
Gm12841	predicted gene 12841			within coordinates
Rr598245	regulatory region 598245			1654 bp distal
Rr598246	regulatory region 598246			1731 bp distal
Rr598247	regulatory region 598247			1171 bp distal
Rr598248	regulatory region 598248			1516 bp distal
Rr598249	regulatory region 598249			522 bp distal
Tssr38640	transcription start site region 38640			1176 bp downstream
Tssr38641	transcription start site region 38641			1145 bp downstream
Tssr43002	transcription start site region 43002			1248 bp upstream
Tssr43003	transcription start site region 43003			227 bp upstream