rs236323601 SNP Detail

Summary

• ID
  rs236323601
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:28317346 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACAAATTG GACACATTAA
  AAATATATAT TCAGCATTCA GGCTCCTGCA CAGAGAGGCT CAAAAACGGC TGTTTAGATT
  CAGCACTATT AACCCTCAAA AGCTGGGGCG GAAAGGGTGC GTACCCCTCC CCCACCCTGG
  CTAGTGGCGG AGGGACCCGG TCAGGAAGCG CGGCCTCTCC CCAGTCGGAG ACCACGCCTC
  Y
  CCCCCCCCCC CCACTCCTCC CAGGAAGCGG TGATAGACAG TTCTGTGTGG TTCTCCACCC
  CCACCTCCCA GCTGAGTGGA GGAGTTGATA TGTCTCATTA TAACAGCCAA TGCAGCCGCC
  ATCCACGCAC AAGCAAAGAA GCATGTCCCA TTTAAATACA CCCACGCAGC CCCAGCGCCC
  TTAGCCGATC AGGGCGCGCA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	I/LnJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZO/HlLtJ	NZW/LacJ	RF/J	SM/J	ST/bJ	WSB/EiJ
ss357366062	MGP_WTSI_3_28162119	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	C	T	T	C	T	C	T	T	T	C	T	T	T	T	C	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	BALB/cByJ	BTBR T<+> Itpr3/J	C57BL/6J	C57BL/10SnJ	C58/J	CAST/EiJ	CE/J	CZECHII/EiJ	I/LnJ	JF1/MsJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NZO/HlLtJ	NZW/LacJ	RF/J	SM/J	ST/bJ	WSB/EiJ
rs236323601					SNP	T	T	T	T	T	T	T	C	T	T	C	T	C	T	T	T	C	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss357366062	MGP_WTSI_3_28162119	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:28317346 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13025	CpG island 13025	within coordinates
Gm54170	predicted gene, 54170	within coordinates
Gm56802	predicted gene, 56802	within coordinates
Rr574555	regulatory region 574555	within coordinates
Rr574556	regulatory region 574556	457 bp proximal
Rr574557	regulatory region 574557	1008 bp proximal
Tnik	TRAF2 and NCK interacting kinase	16 bp upstream
Tssr28643	transcription start site region 28643	8 bp upstream
Tssr28644	transcription start site region 28644	34 bp upstream
Tssr28645	transcription start site region 28645	158 bp upstream
Tssr28646	transcription start site region 28646	199 bp upstream
Tssr28647	transcription start site region 28647	226 bp upstream
Tssr28648	transcription start site region 28648	235 bp upstream
Tssr28649	transcription start site region 28649	370 bp upstream
Tssr32865	transcription start site region 32865	1038 bp downstream