rs236253218 SNP Detail

Summary

• ID
  rs236253218
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:3856816 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGAACTCCCA GTGCTCTGAA
  TTTACATTCA ACTACAAGGA CAATATCTAG CCTGTGGGAG ACTGTCCCAT ATCTTCACCT
  CTGCTCGAAG CTAAAACCAC TCTGCATAAG GGCCCCAGTG TAACCTCAGA CCAGACCCAA
  TCCAGGCTGG TCTCTGGACA CCATGTCCAT AGCATGTCTG CTTTTCCTCA GAGGTCCAAG
  W
  ATTTGCGATC GTGCCCTTGC ATGCAGCCCC AACAGAAGCT GTGAGTGAGA TCGACGCCCT
  CTACGATGTT TACCTAGATG TCTGGCAAAA GTGGGGCCTG GAGGTGAGAC CATCCTAGGG
  ACAATGGGTT CTATTGGCCC TGTTTGTCCC TGGACCAACA GGCATGTCTG CTGGTAGGAC
  ATCATGTTCA TGGGAGACTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss395241389	MGP_WTSI_16_4038952	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236253218					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	T	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss395241389	MGP_WTSI_16_4038952	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:3856816 () rs orientation: forward

Symbol	Name	Function Class
Dnase1	deoxyribonuclease I	Coding-NonSynonymous
Gm15879	predicted gene 15879	1049 bp upstream
Rr510754	regulatory region 510754	1911 bp distal
Trap1	TNF receptor-associated protein 1	1019 bp downstream
Tssr4779	transcription start site region 4779	1565 bp downstream
Tssr136844	transcription start site region 136844	1849 bp downstream
Tssr136845	transcription start site region 136845	1823 bp downstream
Tssr136846	transcription start site region 136846	1800 bp downstream
Tssr136847	transcription start site region 136847	1660 bp downstream
Tssr139750	transcription start site region 139750	1070 bp upstream