rs236008104 SNP Detail

Summary

• ID
  rs236008104
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:162692187 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGCTTGGT TGCACAAAAA
  TCGCTAATGT TTAACGACAG GGTCAGAAAT GACTGTTTTC CTATGGATTT TGTACTGTCT
  CCTCCACATC AATGACAGAA AACACAAATA ATTAAACAAG ATCAGATTGA GCATGCTCCT
  CCATTATTGA GATACTATGT GGGCATGGGG AATCTCATTT CCAAAGACAG AGGGGCCTTG
  R
  GTTATTTAAG AGTGCCAGAG AGCACAGTGA TATTCAGTGT TTTGAACCAT AGTTTATGGT
  AGCTCAGATA TAAGTATTTT TTTTAGTATT TTTTATTGGT TATTTTATTT ATTTACATTT
  TAAATGTTAT CCCCCTTCCA AGTTTCCCCT CTGCAAACCC CCTATCCACT CCTCCTCCCT
  TCTGCTTCTA TGAGGGTGCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss352178855	MGP_WTSI_1_164794749	EVA_MGPV3	EVA_MGPV3	f	SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs236008104					SNP	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	A	G	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss352178855	MGP_WTSI_1_164794749	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:162692187 () rs orientation: forward

Symbol	Name	Function Class
Fmo1	flavin containing monooxygenase 1	Intron
Rr422026	regulatory region 422026	63 bp distal
Rr422027	regulatory region 422027	208 bp proximal
Rr422028	regulatory region 422028	1838 bp proximal
Rr422029	regulatory region 422029	1982 bp proximal
Tssr14673	transcription start site region 14673	1741 bp downstream
Tssr14674	transcription start site region 14674	1807 bp downstream
Tssr14675	transcription start site region 14675	1822 bp downstream
Tssr14676	transcription start site region 14676	1845 bp downstream
Tssr14677	transcription start site region 14677	1865 bp downstream
Tssr14678	transcription start site region 14678	1884 bp downstream