rs235917029 SNP Detail

Summary

• ID
  rs235917029
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:116456702 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACCTACTC AAATCTGACA
  AATAGTTTCT CAGATGCTCA GGCGTCCCAG GCTAATAGCA TCCGCATCAA ATGCATCCCC
  ACCAAAACAG AATTGAAGGG GACAACGGGA AAGTTTTCCA GGAATGGTCA GTAGCAGGTA
  GAGGAGTTTT AGCTGTTGAT CTGATGCCCA GCTAGGTCAT GCTGGCTTAC ATACCCCCAC
  R
  TACCAGTACA TTCTCTCCCA GTGTAAACTA GATGCCATAC TTTATAGGCT TTTAAAAATT
  GGTTTGACTA GAAGACTGGT AGAAAGAGCA GACAGGTGGA ATATGAAATG TGATATTAAC
  AGTACTGACA TTTACTTTGA GGCAGCACAT TATGTAGACC AGGCTGGCCT CAAACTGAGA
  GATCTCCCTG ACTACCTCCC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359358738	MGP_WTSI_3_116365971	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235917029					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359358738	MGP_WTSI_3_116365971	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:116456702 () rs orientation: forward

Symbol	Name	Function Class
4930512P04Rik	RIKEN cDNA 4930512P04 gene	679 bp upstream
Cpgi13738	CpG island 13738	25 bp distal
Gm43191	predicted gene 43191	Intron
Mfsd14a	major facilitator superfamily domain containing 14A	438 bp upstream
Rr375625	regulatory region 375625	977 bp upstream
Rr397966	regulatory region 397966	252 bp downstream
Rr583758	regulatory region 583758	387 bp distal
Rr583759	regulatory region 583759	within coordinates
Tssr31364	transcription start site region 31364	1278 bp downstream
Tssr35324	transcription start site region 35324	949 bp upstream
Tssr35325	transcription start site region 35325	714 bp upstream
Tssr35326	transcription start site region 35326	505 bp upstream
Tssr35327	transcription start site region 35327	483 bp upstream
Tssr35328	transcription start site region 35328	469 bp upstream
Tssr35329	transcription start site region 35329	412 bp upstream
Tssr35330	transcription start site region 35330	399 bp upstream