rs235877562 SNP Detail

Summary

• ID
  rs235877562
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr7:80020416 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAGAATGGAT TTCTTTTAAG
  AGAAAAAGAA ATGCCCATGT TTCTAACGCA ACCCAGTTCT AGGATTGTCC CCATCAGTAC
  TGATTCCTGC TGTGCAAAAC TTCCAGTCCT GGCTTCCAGA GTGCTTTAAA GGGACTCTTA
  GGAAGCTAGC GGCGAGACTG ATAAAGTCCC CAGGGTAGCG GAAGCCAGGC ACAGCGGCTC
  S
  GAAACGGGGC AACTCGAGAC GACCCACAGT GCCTGCCGCC ACCGCCCGCG AGTCCCCACT
  TGCCTGCCGG AGGAGGGAGG ACGCTAGCTG CTGAACGCGC GTGGGCGGGA CCGCTCTCTG
  GAGTCTGCTC TTCGGGCCCT GGTGCTGAAA AGCTCAGTCA CCTCAGCCTG CGTCCTACTT
  AATGCGATCT GATTCCGCTC                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss322281242	CHEV_7_87515554	CHEVERUD	SCREENING_POP	f	SNP	C	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235877562					SNP	C	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:80020416 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm71928	predicted gene, 71928			796 bp upstream
Man2a2	mannosidase 2, alpha 2			Intron
				Noncoding-Transcript-Variant
Rr649878	regulatory region 649878			697 bp proximal
Rr649879	regulatory region 649879			708 bp proximal
Rr649880	regulatory region 649880			761 bp proximal
Rr649881	regulatory region 649881			807 bp proximal
Tssr67437	transcription start site region 67437			309 bp downstream
Tssr67438	transcription start site region 67438			1783 bp upstream
Tssr73220	transcription start site region 73220			1811 bp upstream
Tssr73221	transcription start site region 73221			1686 bp upstream
Tssr73222	transcription start site region 73222			115 bp downstream
Tssr73223	transcription start site region 73223			147 bp downstream
Tssr73224	transcription start site region 73224			175 bp downstream
Tssr73225	transcription start site region 73225			529 bp downstream
Tssr73226	transcription start site region 73226			737 bp downstream
Tssr73227	transcription start site region 73227			813 bp downstream