rs235714177 SNP Detail

Summary

• ID
  rs235714177
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:148084436 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CCTGAGGCTG CCAGAAGAAT
  TCATGGCTCA CTTCCTTGGT CTCAAAGGTC ATGAAGGACA TTATGGAGAA TGGTGTATGT
  GTCCCCCCCT CAATCCCTTA CCTCCTCCTT CTATTTCCCT GGGAAGGGTG GGACCACCAC
  ATATTTCATG CTCAGAGTCT GGGCTTTGGA AAGAAGAAAA GTGGTTTCAT CCTCCAAACC
  Y
  ATCCTGTTGG CACCTTGGAC ACGAGTCTTG GGAGGCAGTA AAAATAAACT TTAGAGGAAA
  TATGCTCTTC TAACATCCCT TGGTGTTTAC ACGTGTAGCT GAATTCTTTA GAGCCTGTAT
  CATGTTGGCT TCCTGGCTGA CTTCATACTC TAAAAAAAAA ATAATAGCTC TTTCACCTGA
  CTGCTAACAG GGACATCTAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321416329	CHEV_4_147374088	CHEVERUD	SCREENING_POP	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235714177					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:148084436 () rs orientation: forward

Symbol	Name	Function Class
Gm13054	predicted gene 13054	1112 bp downstream
Nppa	natriuretic peptide type A	743 bp upstream
Rr407043	regulatory region 407043	within coordinates
Rr604546	regulatory region 604546	253 bp proximal
Rr604547	regulatory region 604547	1432 bp proximal
Tssr40239	transcription start site region 40239	654 bp upstream
Tssr40240	transcription start site region 40240	756 bp upstream
Tssr40241	transcription start site region 40241	1112 bp upstream
Tssr40242	transcription start site region 40242	1346 bp upstream
Tssr40243	transcription start site region 40243	1813 bp upstream
Tssr40244	transcription start site region 40244	1986 bp upstream