rs235599754 SNP Detail

Summary

• ID
  rs235599754
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:111115818 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCTGTGTCA ATGCATGTAC
  CTTAGCTTTG CCATGCCTCC TAGTCCTTTT CTGAGTGCCC ATCTTTGTTT TCTTCCTATC
  CCCTATGCCT GTGTCCTGCA CGCTTCTTAG ACTTCTCTAC CTCAAACCTC ACCTCCCAGT
  AAATATATTC CCACTTCTAT GGAGGAGCCT ATGTTTTGAT CACACCTGTG TTCAATTCTC
  Y
  GCTGGATCAC CCTCACTTAA CTACTTACTG TCTCACTTTC ACATCTGTTG AGTGGCAGAT
  CAGTTTTATC GTTGCTGTCT TGTGGATCAA ATCCCATAAC TAACTGAACA AGCTTTCATT
  GTGTTTGCTC AACAGGTATA GGGAGCCCAA GAAGCTACAG GTGCTACTAC TGCCAAGGAG
  CTTCATCTCC CCTTGAAAGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321261525	CHEV_4_110931226	CHEVERUD	SCREENING_POP	f	SNP	C	T
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235599754					SNP	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:111115818 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Agbl4	ATP/GTP binding protein-like 4			Intron
				Noncoding-Transcript-Variant
Rr407178	regulatory region 407178			1490 bp distal
Rr597444	regulatory region 597444			1476 bp distal