rs235565914 SNP Detail

Summary

• ID
  rs235565914
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr4:138186277 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GCCTG GAGCTTTTAA TGTGTTTGTT
  G
  TAAAGCTGTC AGCCAGGGAG TCACA                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321373810	CHEV_4_138014881	CHEVERUD	SCREENING_POP	f	SNP	G	G
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235565914					SNP	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:138186277 () rs orientation: forward

Symbol	Name	Function Class
Camk2n1	calcium/calmodulin-dependent protein kinase II inhibitor 1	mRNA-UTR
Rr377275	regulatory region 377275	592 bp downstream
Rr602934	regulatory region 602934	863 bp proximal
Rr602935	regulatory region 602935	939 bp proximal
Tssr39865	transcription start site region 39865	1906 bp downstream
Tssr39866	transcription start site region 39866	1586 bp downstream
Tssr39867	transcription start site region 39867	1347 bp downstream
Tssr39868	transcription start site region 39868	1277 bp downstream
Tssr39869	transcription start site region 39869	1049 bp downstream
Tssr39870	transcription start site region 39870	1020 bp downstream
Tssr39871	transcription start site region 39871	964 bp downstream
Tssr44167	transcription start site region 44167	1899 bp upstream
Tssr44168	transcription start site region 44168	1817 bp upstream
Tssr44169	transcription start site region 44169	1723 bp upstream
Tssr44170	transcription start site region 44170	953 bp downstream