rs235460395 SNP Detail

Summary

• ID
  rs235460395
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:59404007 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    AGAGTGTAG ATGGCTTTGG AGACAGCCCC
  TTTGAGCTGC TGCTGCAACA CTGTGAAGTC TACTGAGCTG CTGTAGATGG TGCTAAACAA
  CACCACAAGA ACTATTATAA CTGAGTATTT GTTTGCAAAA ATTGCAGCTA TAATTCACAC
  M
  ACTACTTATT AAGGGGGTGT TACTCCTTTT TTTTAGAAAC TGCTTGAGAG TGGGGTAGTA
  AGCAGCCTGG CTGGCATTCA AACCTCTCAG AGATATCATC TTTCAGCTAC AACTCAGGGC
  TTACCTAGGG ATTCTGTTGA GATGATGTTT                                 
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321807008	CHEV_6_59377016	CHEVERUD	SCREENING_POP	f	SNP	C	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235460395					SNP	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:59404007 () rs orientation: forward

Symbol	Name	Function Class
Cpgi17493	CpG island 17493	445 bp distal
Gprin3	GPRIN family member 3	728 bp upstream
Rr631269	regulatory region 631269	739 bp distal
Rr631270	regulatory region 631270	238 bp distal
Tssr61184	transcription start site region 61184	677 bp upstream