rs235384532 SNP Detail

Summary

• ID
  rs235384532
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:118604243 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GGGAAAGGCT CAGTGGAAGA AAGCCCGATT CCCAAGTACA
  AGGCTCCACA TTTGATCTGC AACTCTGTAC CTTTGGTTTT GTTTGTTTGT TTGTTTTTTG
  K
  TTTTTTTTTT TTTTTTTTTT GGAGACAGGG TTTCTCTGTA TAGCCCTGGC TGTCCTGGAA
  CTCACTTTGT AGACCAGGCT GGCCTCGAAC TCAGAAATC                       
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	QSi5/Ianm	SPRET/EiJ
ss355417021	MGP_WTSI_2_118599498	EVA_MGPV3	EVA_MGPV3	f	SNP	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	T	G	G	G	T	G
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	CE/J	CZECHII/EiJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	PWK/PhJ	QSi5/Ianm	SPRET/EiJ
rs235384532					SNP	G	G	T	G	G	G	G	G	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	T	G	G	G	T	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss355417021	MGP_WTSI_2_118599498	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:118604243 () rs orientation: forward

Symbol	Name	Function Class
D2Mit444	DNA Segment, Chr 2, Massachusetts Institute of Technology 444	930 bp proximal
Gm54146	predicted gene, 54146	within coordinates
Phgr1	proline/histidine/glycine-rich 1	Intron
Rr563334	regulatory region 563334	983 bp distal
Rr563335	regulatory region 563335	533 bp distal
Rr563336	regulatory region 563336	540 bp proximal
Rr563337	regulatory region 563337	1703 bp proximal
Tssr19573	transcription start site region 19573	982 bp downstream