rs235345940 SNP Detail

Summary

• ID
  rs235345940
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:118226453 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCTCCCCT CCACTCACAC
  AGATGTACTT TCATGTATTT GAAAGTAAAG CAAGAAACCA ATTGAGAACT TTCTAATGGA
  GCTGCAGCAT GTCTTGGGTG GTGGCGTTCC ACTGGTCCAT TTTATTTAGT GAACAATACC
  CCCCTCATTT ATTGGTATAT CCACTCTAGG GTCTTAAGAC AAAGCTGCTC AAGTAAGAGC
  Y
  ATGTAGATCA CCAAAGAATG GGGGATTTTT CTCTTAATGT CAAAATTAGT CACTTTGAGA
  ATGAGTTTTT ATTGGGTTTC CTTCTTAAAA TTATTTACTT AGGGCAGAGC TTCAAAGGGC
  TTTCTGTCAA GGTGTTCTCA ACCCTGCACA GTGATGTATT CATAGTGAGT ACTGAAAGGG
  TGGGCTGAGA AATTAAACAC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss359403790	MGP_WTSI_3_118135722	EVA_MGPV3	EVA_MGPV3	f	SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	129S5/SvEvBrd	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235345940					SNP	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	T	C	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359403790	MGP_WTSI_3_118135722	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:118226453 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13750	CpG island 13750	668 bp proximal
Cpgi13751	CpG island 13751	1557 bp proximal
Gm9916	predicted gene 9916	1966 bp upstream
Gm26871	predicted gene, 26871	within coordinates
Gm54528	predicted gene, 54528	1917 bp upstream
Mir137	microRNA 137	1053 bp upstream
Rr375642	regulatory region 375642	241 bp upstream
Rr583895	regulatory region 583895	1325 bp distal
Rr583896	regulatory region 583896	676 bp distal
Rr583897	regulatory region 583897	50 bp proximal
Rr583898	regulatory region 583898	1476 bp proximal
Rr583899	regulatory region 583899	1977 bp proximal
Tssr31408	transcription start site region 31408	1339 bp downstream
Tssr31409	transcription start site region 31409	1285 bp downstream
Tssr31410	transcription start site region 31410	1266 bp downstream
Tssr31411	transcription start site region 31411	1129 bp upstream