rs235240052 SNP Detail

Summary

• ID
  rs235240052
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr3:146191722 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ccattacct ctgattggtt aataaagggc
  tggccagcca atttggaact tcaaatccca gagagggtct caagtaggca ccacaaaggc
  agggggatgg aggagaggga gaatgagaaa aggagagaga gagagagaga gagagagaga
  R
  agagagagag agagagagag agagagagag aagcttcaac atgatcactg gtcataagca
  ggtcaccaag ggaagtggtc ataaggatac tgatggagca gaagcaacca agacaggact
  aagatggcaa gtaatggggc acgtggctgg                                 
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	LG/J	SM/J
ss321010516	CHEV_3_146148931	CHEVERUD	SCREENING_POP	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	LG/J	SM/J
rs235240052					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:146191722 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Rr587033	regulatory region 587033			612 bp proximal
Rr587034	regulatory region 587034			621 bp proximal
Rr587035	regulatory region 587035			682 bp proximal
Spata1	spermatogenesis associated 1			Intron
				mRNA-UTR
				Noncoding-Transcript-Variant