rs235130181 SNP Detail

Summary

• ID
  rs235130181
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:150998771 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGGCTGCTTT TGAAAGATTC
  ATGTTAAGAA ATGTTTATGT ATAATATGTA TGTGTATCAT ATTTTATGTT CCTCAAACTT
  TGACTTACAT TTTGAAGTAA AATGTATTAT AATGTCTATA TTCATGAATT ATATTAAGGC
  TGATTAATAA AGACTTCAGA TCACTTTTTA AAGTATATTA TAAAGAGGAA CATCAAATAA
  M
  TATACCATAT TTATTGCCAT TTTATAGATG AAAAATTAAT TATTTTCATA TGCATTTCTT
  ATAGAGTTTA TTGCTGAGTA CTCAAAGAGG AAAAAACATC TGCTTCCTTT TTTTTAGAAT
  TTTTCATGAA TTAGGTTCTT GATAGAGATT ACTGCATCAG CAGGCCTGGG TGGTTAGAGA
  CCAAGAACCG ACAGAAGAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss360240396	MGP_WTSI_3_150956098	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C
SNP Consensus Information
SNP					Consensus Type	129P2/OlaHsd	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LEWES/EiJ	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RIIIS/J	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs235130181					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	A	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss360240396	MGP_WTSI_3_150956098	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	A/C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:150998771 () rs orientation: forward

Symbol	Name	Function Class
4930555A03Rik	RIKEN cDNA 4930555A03 gene	1028 bp upstream
Rr587386	regulatory region 587386	871 bp proximal
Rr587387	regulatory region 587387	1313 bp proximal
Rr587388	regulatory region 587388	1995 bp proximal
Tssr1093	transcription start site region 1093	1385 bp upstream
Tssr1094	transcription start site region 1094	1397 bp upstream
Tssr32380	transcription start site region 32380	1007 bp upstream
Tssr32381	transcription start site region 32381	1069 bp upstream
Tssr32382	transcription start site region 32382	1095 bp upstream