rs234908038 SNP Detail

Summary

• ID
  rs234908038
• Variation Type
  SNP
• Alleles
  C

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:120681990 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCAGAAGAC CCAGGTACAG
  TTCCCAGCAC ACACACACGG CAGCTCACAA CCTCTGTGAC TCCAGTTCCA GGGGACCTGA
  TGCCTTCTTC TGGCTTTGCG AGCCCTCCAT CCACATGGTA CACATAACCT CATGCAGGAA
  TATATATATA TATATATATA TATATATATA TATATATATA TATATATATA TATACATACA
  C
  ATACACATAA AAATAAGGAA GTTTTAAGAT GAAAGAGAAA AAAGAGAAAG GGAGGGTGAA
  AGGGGAGGGA GGGAGAGAGG GAAGAAGGAA AGAAGGGGAG AGACAGAGAG AAATAGATGT
  TGGGACTGAC TGGGAAACAA ACCTTAAAAG ATGGACAGAG GAGTGGGTAG AGGGCAAAGG
  GGAGAGGGAT GAACAGTGAC                                            
  
  C = C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	DBA/1J	I/LnJ	KK/HlJ	LEWES/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J
ss359460289	MGP_WTSI_3_120591259	EVA_MGPV3	EVA_MGPV3	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CBA/J	DBA/1J	I/LnJ	KK/HlJ	LEWES/EiJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	QSi3/Ianm	QSi5/Ianm	RF/J	SEA/GnJ	SJL/J	ST/bJ	SWR/J
rs234908038					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss359460289	MGP_WTSI_3_120591259	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:120681990 () rs orientation: forward

Symbol	Name	Function Class
6530403H02Rik	RIKEN cDNA 6530403H02 gene	1257 bp upstream
Rr583992	regulatory region 583992	1780 bp distal
Rr583993	regulatory region 583993	1353 bp distal
Tssr35394	transcription start site region 35394	1595 bp upstream