rs234885752 SNP Detail

Summary

• ID
  rs234885752
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  137
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:94236677 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GCACTGCCAC CTGCTTTCTA
  CTTCCTCGGG GAGAGGTGGT GGCGCGCGGG TCCTGGTCCA GCGGCTCCAA AGGCAGAACT
  AATGATGAAT CCGTGACTCC TAACCCGGGA GCTCAAGTCT CAGCTCCCCG GGGTCGGTTC
  CGGGACGGCG CGCGGCCCCA AGGTGGAAGG CTGAGAAGTT CCCCACGGCG GAGCCGGGGC
  K
  AGGGGACCAG AGGGGAGGGG GCGGCGCCAG GTCGGAGCGC AGGAAGCCTC GGCCCGTGGG
  CCGGGACCGT GGGAAGCCAA GCTGGGGGCG GGGCCGCGCG GAGCCACCCA GGGGCCCGGC
  TCCGGGATTC CCCCTGATCG GGCGCGGGCA GAGAGGGGGC ACCCTGGCCG CTACCTGCTG
  TTGGATCTTC CCGTCCTCCG                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
ss354878121	MGP_WTSI_2_94246489	EVA_MGPV3	EVA_MGPV3	f	SNP	T	G	G	G	G	G	T	T	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	T	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	B10.RIII-H2 H2-T18/(71NS)SnJ	BALB/cByJ	BALB/cJ	BTBR T<+> Itpr3/J	BUB/BnJ	C3H/HeH	C3H/HeJ	C57BL/6J	C57BL/6NJ	C57BL/10J	C57BL/10SnJ	C57BR/cdJ	C57L/J	C58/J	CAST/EiJ	CBA/J	CE/J	CZECHII/EiJ	DBA/1J	DBA/2J	FVB/NJ	I/LnJ	JF1/MsJ	KK/HlJ	LG/J	LP/J	MA/MyJ	MOLF/EiJ	NOD/ShiLtJ	NON/ShiLtJ	NZB/BlNJ	NZO/HlLtJ	NZW/LacJ	PL/J	PWK/PhJ	QSi3/Ianm	QSi5/Ianm	RF/J	RIIIS/J	SEA/GnJ	SJL/J	SM/J	SPRET/EiJ	ST/bJ	SWR/J	WSB/EiJ	ZALENDE/EiJ
rs234885752					SNP	T	G	G	G	G	G	T	T	G	G	G	G	G	G	G	G	T	G	G	G	G	G	G	G	G	G	T	T	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss354878121	MGP_WTSI_2_94246489	SC_MOUSE_GENOMES	SC_MOUSE_GENOMES	f	SNP	G/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:94236677 () rs orientation: forward

Symbol	Name	Function Class
2810002D19Rik	RIKEN cDNA 2810002D19 gene	375 bp upstream
Cpgi11962	CpG island 11962	within coordinates
Rr561373	regulatory region 561373	171 bp distal
Rr561374	regulatory region 561374	179 bp distal
Rr561375	regulatory region 561375	145 bp proximal
Rr561376	regulatory region 561376	337 bp proximal
Rr561377	regulatory region 561377	370 bp proximal
Rr561378	regulatory region 561378	424 bp proximal
Tssr19003	transcription start site region 19003	387 bp upstream
Tssr19004	transcription start site region 19004	431 bp upstream
Tssr25328	transcription start site region 25328	1330 bp upstream
Tssr25329	transcription start site region 25329	315 bp downstream
Ttc17	tetratricopeptide repeat domain 17	Intron